Packages

p

feature

format

package format

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Type Members

  1. sealed trait FeatureType extends AnyRef

    A GTF2.2 feature type

  2. class GTF22Record extends FeatureBuilderModifier

    A record representing the information contained in one line of a file in GTF2.2 feature.format (feature.format specification)

  3. sealed trait MatureRNA extends FeatureType

    A GTF2.2 feature type that represents part of a mature RNA transcript

Value Members

  1. object CDS extends MatureRNA with Product with Serializable

    GTF2.2 CDS feature type

  2. object Exon extends MatureRNA with Product with Serializable

    GTF2.2 exon feature type

  3. object FeatureType

    Utilities for GTF2.2 FeatureTypes

  4. object Ignore extends FeatureType with Product with Serializable

    Nonstandard feature type.

    Nonstandard feature type. See feature.format specification for details.

  5. object Intergenic extends FeatureType with Product with Serializable

    GTF2.2 intergenic feature type

  6. object IntergenicCNS extends FeatureType with Product with Serializable

    GTF2.2 intergenic CNS feature type

  7. object IntronicCNS extends FeatureType with Product with Serializable

    GTF2.2 intronic CNS feature type

  8. object StartCodon extends MatureRNA with Product with Serializable

    GTF2.2 start codon feature type

  9. object StopCodon extends MatureRNA with Product with Serializable

    GTF2.2 stop codon feature type

  10. object UTR3 extends MatureRNA with Product with Serializable

    GTF2.2 3'-UTR feature type

  11. object UTR5 extends MatureRNA with Product with Serializable

    GTF2.2 5'-UTR feature type

Ungrouped